11 Master's degrees offered by the university

The Institute of Biotechnology (IBT) at National Tsing Hua University aims to cultivate graduate students who are capable of both basic and applied research in biology and medicine. 

Welcome to the Department of Engineering and System Science at National Tsing Hua University. Its original name was "The Department of Nuclear Engineering". 

Situated in the College of Electrical Engineering and Computer Science, the Information Systems and Applications Institute at National Tsing Hua University offers a complete degree program including master’s and doctorate degree.

The Bioinformatics and Structural Biology institute at National Tsing Hua University currently consists of twelve faculty members with expertise spanning virtually all areas of , structural biology and related fields. 

The phenomenal growth of Internet access, multimedia Communications Engineering, and wireless communications has made broadband communication systems and networking technologies one of the most important parts for science and technology development in developed countries. Adapting to this trend, National Tsing Hua University founded the Institute of Communications Engineering in 1999.

The department of Industrial Engineering and Engineering Management - Engineering Management at National Tsing Hua University was established and renamed the Department of Industrial Engineering and Engineering Management (IEEM). 

Situated in the College of Electrical Engineering and Computer Science, the Department of Computer Science at National Tsing Hua University offers a complete degree program ranging from baccalaureate to the doctoral.

National Tsing Hua University (NTHU) collaborates with Stony Brook University (SBU) from the US on the Dual Master Program for Global Operation Management in fall at National Tsing Hua University. 

The Institute of Astronomy at National Tsing Hua University was established with its master program.

International Business Administration students at National Tsing Hua University are required to register fulltime for at least two years, but no more than 4 years. A minimum of 48 credits for courses plus 4 credits for master's thesis are required for graduation from the IMBA program.

The Department of Chemistry at National Tsing Hua University was founded  initially with only an undergraduate program.  Graduate studies were established shortly thereafter.