231 Master's degrees offered by the university

Forensic Science from Manipal Academy of Higher Education deals with the application of multiple scientific methods to solve legal issues.

Department of Pharmaceutical Regulatory Affairs and  Management (Formerly called as Department of Pharmacy Management), Manipal College of Pharmaceutical Sciences (MCOPS), Manipal Academy of Higher Education (MAHE), Manipal is one of its kind. Manipal Academy of Higher Education offers the Pharmaceutical Regulatory Affairs programme. 

The Community Medicine programme from Manipal Academy of Higher Education specialists are trained to be primary care physicians, researchers and administrators with the necessary clinical skills, knowledge of epidemiological and management principles, and have the ability to apply this knowledge for the betterment of the community.

The Neurosciences programme from Manipal Academy of Higher Education will help you develop the ability to practice collaboratively and responsibly with multidisciplinary team members to deliver high quality health care

Pharmacology at Manipal Academy of Higher Education is a two-year programme comprising four semesters designed to provide advanced training in various aspects of pharmacology, molecular biology, pre-clinical & clinical drug development and pharmacotherapeutics.

The Anatomy programme from Manipal Academy of Higher Education has a number of ongoing research projects - short term student projects, ICMR research project, postgraduate dissertation work & PhD programs.

The Interior Design program at Manipal Academy of Higher Education is a step towards exploring and understanding the contemporary interior design environment of the region through research, theory, design education and practice.

Pharmacognosy is probably the oldest of the modern sciences that involves the study of the physical, chemical, biochemical and biological properties of natural drugs, including the search for new drugs from natural sources.Manipal Academy of Higher Education offers the Pharmacognosy programme. 

The Experience Design, M.A. course from Manipal Academy of Higher Education aims to create opportunities that enhance lived experiences using technologies as creators, facilitators and mediators.

This Molecular Biology and Human Genetics graduate program at Manipal Academy of Higher Education provides knowledge and skills in areas related to human health and healthcare 

The Paediatrics programme from Manipal Academy of Higher Education  is primarily concerned with the delivery of health care to children, training of undergraduate and postgraduate students, coordinating with national health programs, health education of the community and conducting and participating in various research activities to contribute effectively to the advancement in the field

The Medical Courses programme from Manipal Academy of Higher Education is offered in the following streams: Anatomy, Biochemistry, Microbiology, Pharmacology and Physiology.

The students of General Surgery programme from Manipal Academy of Higher Education will be trained to tackle any clinical situation in an ethical and evidence based approach, always keeping the wellbeing, including psychological, of the patients under their care. Every student pursues a research topic, latest in the current scenario, guided by the faculty

The students of this Genetic Counseling programme from Manipal Academy of Higher Education have exposure to research training as well.

In addition to PEOs, the B.Tech chemical engineering program established a set of Program Outcomes(POs), based on National Board of Accreditation Guidelines, and expected to be met by every graduating student from the program at the time of graduation.Manipal Academy of Higher Education offers the Chemical Engineering programme. 

The Radiation Therapy Technology programme from Manipal Academy of Higher Education offers a semester-choice-based credit system. 

Urban Design and Development from Manipal Academy of Higher Education believes in training architects and designers in theoretical as well as practical problem solving skills in issues associated with designs at the urban scale.

A graduate programme in Medical Biotechnology from Manipal Academy of Higher Education is providing knowledge and skills in different fields of biotechnology, with a major focus on human health-related aspects

The Obstetrics and Gynaecology programme from Manipal Academy of Higher Education is approved by Medical Council of India and is recognised worldwide after clearing the eligibility exams of the respective countries.

MTech in Automobile Engineering Course is offered by Department of Aeronautical & Automobile Engineering.Manipal Academy of Higher Education offers the Automobile Engineering programme.